Japan 3-week Itinerary
Japan is a country unlike any other and one of our most surprising destinations to date! This carefully designed Japan 3-week itinerary covers our favorite spots and hidden gems nationwide. You’ll experience a perfect mix of nature, history, and modern culture as you explore neon-lit cities and snow-capped mountains.
Is 3 weeks too long? Have a look at our 2-week Japan itinerary.
Day 1-2: Osaka
Welcome to Osaka and the start of your 3-week Japan itinerary! Japan’s third-largest city offers a vibrant introduction to Japan with its mix of neon lights, unique fashion, and peaceful temples. Although it’s much smaller than Tokyo, it was one of the most fun-filled places in our Japan itinerary.
As big shoppers (well, Hannah!), the city is a fashion paradise, with endless vintage stores and quirky boutiques around every corner. There’s also delicious street food and welcoming locals; we were in heaven. Check out all the best shopping districts here.
Read more: Things to do in Osaka, Japan
In the evening, head to Harukas 300 or Kuchu Teien Observatory for stunning views of the city lit up at night, marking the perfect start to your 3-week Japan itinerary.
Alternatively, for something more traditional, explore the narrow, stone-paved street of Hozenji Yokocho. Lovely lanterns will guide you to the tiny traditional restaurants on the street that are often frequented by the rich and famous of Osaka, Japan.
From the Airport
Osaka has two airports: Kansai International and Itami Airport. You’ll likely fly into Kansai to start your 3-week Japan itinerary. From here, it takes about 35 – 50 minutes to get into the city by train or bus, depending on where you need to go. For more convenience, book your airport transfer in advance here.
Alternatively, if you fly into Tokyo first, you can book a Japan Rail Pass, which you can use to reserve your bullet train (Shinkansen) tickets to Osaka (3-4 hours).
Buy your Japan Rail Pass in advance here
We bought an e-sim in advance of our trip, meaning we were able to use Google Maps immediately when we landed in Japan. This also helped us navigate our way into the city much more quickly. Buy your sim online here.
Where to Stay in Osaka
For the best experience in Osaka, we recommend staying near the areas of Shinsaibashi, Dotonbori, or Namba. These areas are vibrant, centrally located, and close to all the best things to do in Osaka.
America Mura is another excellent place to stay; this was our favorite spot in the city! If you want to stay in this fashion-forward district, book your accommodation well in advance.
Got less time? Follow our 2-week Japan itinerary instead!
Day 3-4: Koyasan (3-week Japan Itinerary)
From Osaka, travel to the sacred temple village of Koyasan in the area of Mount Koya. With over 100 temples, this spiritual hub is one of Japan’s most important Buddhist sites and a serene destination for exploring ancient traditions.
Spend your time in Koyasan wandering among the beautiful temples and serene gardens. Be sure to also visit Okunoin, Japan’s largest cemetery, surrounded by towering cedar trees. At an elevation of 800 meters, the mountain air is nice and cool; we loved our time here.
Read more: Koyasan temple stay
How to Get from Osaka to Koyasan
We recommend renting a car in Osaka and driving to Koyasan. Otherwise, hop on the Nankai Koya Line and start your journey of about an hour and 15 minutes to get to Gokurabashi.
From here, take the cable car that ascends the mountain to Koyasan. Please note that the Japan Rail Pass does not cover this route.
We recommend to rent a car in Japan through Rentalcars.com with many rental locations and flexible cancellation. Book your rental car here.
Where to Stay in Koyasan
One of our most unique stays during our 3 weeks in Japan was our night in a traditional temple (Shukubo). We joined the monks for a traditional dinner, morning prayers, and meditation. It’s an unforgettable way to immerse yourself in the spiritual culture of Koyasan.
Note: We recommend staying overnight in Koyasan. However, if you only want to do a day trip, you can book this private day tour to Koyasan from Osaka
Day 5: Nachi Waterfall
On day 5 of your 3-week Japan itinerary, visit the tallest waterfall in Japan! Nachi Falls is a beautiful 133-meter-high waterfall surrounded by lush greenery and ancient woodland. It’s famous for its scenery and sacredness, as the falls are believed to be the home of a significant Shinto deity.
Read more: Visiting the Nachi Falls
Tip: If you have the time, you can also walk the paths of the ancient Kumano Kodo pilgrimage trails. It’s the perfect way to connect with the region’s natural beauty and spiritual history.
How to Get from Koyasan to Nachi Falls
From Koyasan, drive south towards Katsuura and enjoy the 3.5-hour drive past lush forests and with glimpses of the beautiful coastline.
We recommend to rent a car in Japan through Rentalcars.com with many rental locations and flexible cancellation. Book your rental car here.
By Public Transport
Take the cable car back down to Gokurakubashi Station and return to Namba Station in Osaka. From here, jump on the JR Limited Express train to Kii-Katsuura Station and continue by local bus or grab a taxi to Nachi Falls.
The journey will take about six hours by public transport, depending on train schedules and connections. The Japan Rail Pass covers most of these routes, making it a perfect option for those traveling through Japan by train.
Where to Stay Near Nachi Falls
After a day of traveling and exploring the impressive Nachi Falls, relax and unwind by booking a hotel in the nearby town of Katsuura. Here, you can enjoy local hot springs, get some good local food, and experience traditional Japanese hospitality.
Day 6: Kumano
Drive from Nachi Falls to the heart of the Kumano region to visit the sacred Kumano Hongu Taisha. This is one of three grand shrines of the Kumano Kodo pilgrimage route and a spiritual center nestled between the lush forest and ancient pathways.
How to Get from Nachi Falls to Kumano
Drive the Kumano Scenic Route to reach Kumano Hongu Taischa from Nachi Falls. The journey will take about 1.5 to 2 hours and offers some of the most scenic mountain views during your 3 weeks in Japan!
We recommend traveling by car for this part of your Japan itinerary as it offers the flexibility to stop and enjoy all the different viewpoints.
We recommend to rent a car in Japan through Rentalcars.com with many rental locations and flexible cancellation. Book your rental car here.
Public Transport: This journey will take about 3 hours by public transport as you’ll need to take a bus to Shingu Station before transferring to another bus for Hongu Taischa. (See all your route options)
Where to Stay in Kumano
The area around Kumano Hongu Taischa offers several charming onsen towns for a relaxing stay. We recommend staying at Yunomine Onsen, one of the oldest onsen villages in Japan. This is a fantastic choice for relaxing and experiencing the traditional hot springs.
You can also choose more authentic Japanese lodging on the outskirts of town. We stayed at JHoppers, which was excellent!
Day 7-9: Kyoto
Spend days 7 and 8 exploring Japan’s cultural heart, Kyoto. With its unique mix of historic temples, traditional tea houses, and trendy art spaces, exploring Kyoto is one of the best things to do in Japan. This large city gave us a small-town feel, and we think it’s an absolute must-visit on your 3-week Japan itinerary!
Read more: Best things to do in Kyoto, Japan
Our favorite area in Kyoto was Sannenzaka, a charming stone-paved street lined with tea and sweet shops. It was the perfect place to sample some of our favorite local foods! Make sure to also visit one of these ancient tea houses to join a traditional tea ceremony (book your spot at this popular one in Sannenzaka).
Tip: Follow the main street all the way to the incredible Kiyomizu-dera.
Here, you’ll have one of the most breathtaking views over the city and its surroundings.
Rent a Kimono
In Kyoto, locals often encourage visitors to wear kimonos to appreciate and engage with their culture. You can rent a kimono for the day in areas like Gion, offering a unique opportunity to immerse yourself in traditional Japanese customs.
How to Get from Kumano to Kyoto
Enjoy another 5-hour scenic drive offering stunning views of the mountains, rivers, and traditional Japanese villages. You may choose to drop off your rental car in Kyoto for convenience.
By train: If you’re traveling with your Japan Rail Pass, take the JR Limited Express Huroshio to Shin-Osaka Station and transfer to the Shinkansen bullet train for a quick trip to Kyoto, Japan. This journey will take about 5 hours, but you’ll be able to enjoy all the views from your comfortable seat.
Buy your Japan Rail Pass in advance here
Where to Stay in Kyoto
There are many things to do in Kyoto, and each region offers a variety of accommodations suited to every budget. The best district for you to stay depends on the type of trip you’re planning. For example, if you’re following our 3-week Japan itinerary, we recommend staying in Shimogyo (near Kyoto Station). This is easiest for doing some fun day trips out of the city!
Did you know? The deer roaming around Nara Park are sacred animals and are considered messengers of the god in Shinto belief.
There is lots to do in Nara Park; visit the many temples, botanic gardens, and other must-see highlights in the area, such as the UNESCO site of Todai-ji Temple. You can also explore Nara Park and other highlights on this walking tour.
Read more: Best things to do in Nara Park
How to get there
From Kyoto Station, take the JR Nara Line for a direct trip to Nara, which takes just under an hour and is covered by the Japan Rail Pass. If you prefer driving, it’s about an hour’s drive south with your rental car.
Buy your Japan Rail Pass in advance here
Day 11: Day Trip to Arashiyama
Just a 20-minute train ride from busy Kyoto, you can find the must-see Arashiyama Bamboo Grove. Stroll through the towering bamboo trees that create a magical green canopy and walkway. We loved hearing the bamboo blow in the wind!
When the sun hits just right, golden rays of light slip through the canopy of trees, creating the perfect place to take some incredible photos, so don’t forget to bring your camera.
Top Tip: Right next door to the Bamboo Grove, you’ll find another grove named Adashino Nenbutsuj. In our opinion it was equally beautiful but with far fewer people! Find the location here.
How to get to Arashiyama
From Kyoto, take the 20-minute train ride towards Saga-Arashiyama Station. This journey is covered by your Japan Rail Pass! You can also drive to Arashiyama, which will take about 20 to 30 minutes, depending on traffic.
Day 12-14: Fuji – Our Favorite Area on Our 3-Week Japan Itinerary
You can’t spend 3 weeks in Japan without visiting the iconic Mount Fuji area (one of our bucket list destinations)! This massive volcano of 3776 meters high can be seen from hundreds of kilometers away and is truly incredible.
Explore the Fuji Five Lakes region, and don’t forget the famous Lake Kawaguchiko at the volcano’s base. The lake offers stunning views of Mount Fuji, which you can see walking along the shore or from one of the many trails around the lower slopes of Mount Fuji, Japan.
Another great view is from Chureuto Pagoda — a picturesque spot with a view of Mount Fuji, the Pagoda, and the cherry blossoms (if you visit in spring).
Food Tip: We loved ‘FabCafe Fuji’ and had a surprisingly good Italian dinner at ‘Taverna La Cura’ in the village.
Getting around
We recommend spending at least one day exploring the beautiful surroundings of Mount Fuji by renting a car! We rented a car from Mishima station, which gave us much more freedom to explore the surrounding area, like Shiraito Falls and the impressive Momiji Corridor.
Also read: Best thing to do near Mount Fuji, Japan
How to Get from Kyoto to Mount Fuji
If you’re traveling by train, hop on the direct Kodama Line from Kyoto to Shin-Fuji (covered by your Japan Rail Pass). You can also rent a car and drive the roughly 4,5 hours to the Mount Fuji region. Bus is also an option, but please note this journey will take 6+ hours.
Get your Japan Rail Pass here
Where to Stay Near Mount Fuji
Mount Fuji was, without a doubt, our favorite area in Japan! We loved staying in a traditional onsen hotel in the beautiful countryside. These onsens are thermal baths naturally heated by the volcano and are an essential part of Japanese culture.
We stayed at La Vista FujiKawaguchiko, but anywhere around Kawaguchi Lake will put you in the center of all the best things to do in the area.
Tip: This area is not just well-loved by us but a favorite amongst all tourists traveling to Japan. Because of this, we recommend booking your accommodation well in advance, especially during spring and fall, as prices rise in the high season!
Day 15: Visit the Famous Snow Monkeys
For the next stop on your 3-week Japan itinerary, you’re traveling to the Jigokudani Valley to visit the famous red-faced snow monkeys, also known as Japanese Macaques. These cute monkeys are known for their love of soaking in the area’s onsens (hot springs), and the winter scenery offers the perfect backdrop.
Hike along a snowy mountain trail lined with pine trees to reach the thermal springs where the monkeys gather. Make sure to dress warmly and wear sturdy shoes because the trail can be icy.
After you’ve spent some time watching the snow monkeys and exploring the beautiful trail, walk back to the entrance for a delicious lunch at Enza Cafe. We loved this place for its homemade apple pie; save some room to taste it!
Read more: Snow Monkeys in Japan
How to Get from Mount Fuji to Yudanaka
Traveling to the Snow Monkeys by train requires you to travel 2 hours towards Tokyo Station and then transfer to the Shinkansen bullet train (covered by your Japan Rail Pass) towards Nagano. From here, take the Nagano Dentetsu Line to Yudanaka or take a local bus directly to Snow Monkey Park.
If you’ve rented a car in Fuji, you can drive the beautiful 4-5 hours route with stunning mountain and countryside views. Ensure your vehicle has winter tires or chains if traveling in the colder months.
We recommend to rent a car in Japan through Rentalcars.com with many rental locations and flexible cancellation. Book your rental car here.
Where to Stay in Yudanaka
Since it’s a long journey into the mountains, we recommend staying the night after you’ve visited the Snow Monkeys. Luckily, most hotels in Yudanaka have private onsens where you can unwind and relax after a long day — just like the monkeys!
We loved staying at Koishiya Ryokan because they provided us with a free train station pick-up, transport to the start of the Snow Monkey Park trail, and a service to book our private onsen.
Tip: You can also stay in the neighboring town of Shibu Onsen, known for its amazing hot springs.
Day 16-19: Tokyo
It’s the last week of your 3-week Japan itinerary, and we recommend spending most of it in the capital – the perfect place to end this adventure.
Our Favorite Things To Do in Tokyo
Tokyo is packed with things to do, so you’ll definitely want to stay for at least a couple of days! Visitors can explore the neon-lit streets, bustling food markets, and abstract art museums. However, there are also plenty of green spaces too, like the serene Shinjuku Gyoen National Garden. Some of our favorite spots were:
- Tokyo Skytree (panoramic view of the city)
- Sensō-ji (sacred temple)
- Imperial Palace (fortified castle)
- Shibuya Crossing (busiest crossing in Japan!)
- Shimokitazawa (trendy shopping)
- Tsukiji Outer Market (fresh, local food)
Tip: Visit Teamlab Planets and experience the magic of this sensory museum with large-scale art spaces. We’ve visited similar museums to this in Amsterdam but this was even more unique!
How to Get from Yudanaka to Tokyo
From Yudanaka, take the Nagano Dentetsu Line to Nagano Station, which takes about 45 minutes. Transfer to the Hokuriku Shinkansen to Tokyo; this 1.5-hour trip is also covered by your Japan Rail Pass (order in advance here).
If you’re traveling by car, the journey to Tokyo will take about 4 hours, but the drive will offer some of the most beautiful views of the Japanese Alps and surrounding countryside! We loved the flexibility to stop underway and enjoy the views during our 3 weeks in Japan.
We recommend to rent a car in Japan through Rentalcars.com with many rental locations and flexible cancellation. Book your rental car here.
Where to Stay in Tokyo
You can’t go wrong choosing a neighborhood to stay in while in Tokyo! The incredible metro system also makes it easy to travel between different parts of the city. (See all hotels)
We chose to stay in the Akasaka neighborhood as it’s close to the highlights, but it’s still away from the main tourist crowds. There are also fantastic train connections to get you where you need to go.
Day 20: Go on a Day Trip to Kamakura
A day trip to the charming fishing village of Kamakura offers the perfect last getaway on your 3-week Japan Itinerary. Just an hour south of the city by train, this coastal gem is known for its iconic 11-meter Great Buddha and stunning beach views of Mount Fuji.
Start your day early and grab breakfast at the Delifrance bakery at the train station in Kamakura before exploring other local spots.
From here, walk down Komachi-Dori Street to browse a few shops and drink a coffee or matcha. This is also the perfect place to try some typical Japanese snacks or hunt for some iconic souvenirs!
Also read: Best things to do in Kamakura, Japan
How to Get from Tokyo to Kamakura
Getting to Kamakura is super easy; just jump on the JR Yokosuka or the JR Shonan-Shinjuku Line to Kamakura Station. The journey will take you about an hour from central Tokyo, and we think it’s the perfect way to end your 3 weeks in Japan.
Make sure to buy your Japan Rail Pass in advance here
You can also book a guided day tour to explore Kamakura from Tokyo. These tours include transport, visiting the highlights of Kamakura, and a quick trip to Enoshima Island (book your day tour in advance).
Day 21: Last Day of Your 3-Week Japan Itinerary
As your incredible 3-week journey through Japan ends, savor your last day in this beautiful country. If you have a return ticket from Osaka, jump on the train and enjoy a last meal in this foodie paradise.
Alternatively, if you’re flying home from Tokyo, you have time to enjoy the neon lights of this vibrant city one last time.
Also read: Best things to do in Japan
Our Favorite Accommodations
Whatever your budget, Japan offers a wide range of fantastic accommodation options! Stay in the traditional ryokans for an authentic experience, or stay in luxury hotels with stunning mountain views. Here are some of our favorite stays for each location:
- Osaka: R Hotel Honmachi, Hotel Noum Osaka, Hotel Cordia Hommachi, Citadines Namba
- Koyasan: Koyasan Syukubo Ekoin Temple, Rengejoin Temple, Koyasan Shukubo Yochi-in
- Kumano: J-Hoppers Guesthouse, Oninosanpomichi, Iruka Onsen Hotel
- Kyoto: Insomnia KYOTO OIKE, Imu Hotel Kyoto, Kyoto Granbell Hotel
- Nara: SETRE Naramachi, Nara Visitor Center and Inn, Onyado Nono Nara
- Mount Fuji: La Vista Fujikawaguchiko, Fuji Onsenji Yumedono, Dot Hostel&Bar
- Yudanaka: Koishiya Ryokan, Yudanaka Seifuso, Kamei no Yu
- Kamakura: Hotel Metropolitan, Kamakura Seizan, Tosei Hotel Cocone Kamakura
- Tokyo: Hotel 1889, nine hours Hamamatsucho, Via Inn Prime Akasaka, Citadines Shinjuku
How to Visit Japan on a 3-Week Itinerary
This 3-week Japan Itinerary starts in Osaka and ends in Tokyo, but you can easily do the trip the other way around! We recommend getting a return flight as they are usually cheaper.
Tip: It’s best to get an eSim in advance so you’re directly connected when you land in Japan. Buy your sim online here.
Getting Around Japan
By Car
We loved the flexibility to explore some parts of Japan at our own pace with a rented car; it’s the ultimate feeling of freedom! It also makes it easier to travel to some of the remote places that take a bit longer to access by public transport, such as Snow Monkey Park.
Renting a car also gives you the option for spontaneous detours and stops along the way, which is especially nice during scenic mountain drives with amazing views.
We recommend to rent a car in Japan through Rentalcars.com with many rental locations and flexible cancellation. Book your rental car here.
By Public Transport
However, Japan’s extensive and efficient public transportation system means a car isn’t necessary to travel the country comfortably! (We traveled by train between cities) Cities are well-connected by metro systems and local trains, while the Shinkansen bullet trains make traveling between major cities quick and convenient.
Tip: If you’re looking for a fun way to explore short distances, consider renting a bike! Cities like Kyoto are easy to explore by bike, and as soon as you stray away from the main road, you’ll find quiet unexplored streets.
Japan Rail Pass
The Japan Rail Pass is perfect for exploring multiple major cities on your Japan Itinerary because this ticket gives you unlimited access to all public transport throughout Japan! You’ll notice that the public transport system here is so well organized that you’ll never experience delays; trains leave on the dot! This makes traveling with the Japan Rail Pass convenient and comfortable.
How Much Does a 3-Week Trip to Japan Cost?
Even though Japan isn’t a cheap destination, it’s worth saving for this trip! You’ll spend most of your budget on accommodations, food, and transport. However, you can save money by visiting in the low season, exploring all the free things to do, taking public transportation, and enjoying all the delicious street food.
Best Time To Visit Japan
We loved visiting Japan during the fall (September – November) when the leaves were changing colors, and we could see snow in higher regions of Japan, such as Koyasan! It’s good to note that the Snow Monkeys will only be in the onsens in winter. The prices are also lower during these months, and there are fewer crowds, which makes the experience even better.
Spring (March-May) is also a great option, especially if you want to see the famous pink cherry blossoms. Remember that hotels and tours get fully booked during this time (and prices rise), so we recommend booking everything well in advance.
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